Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs10484089 chr14:52031069 A/G 6.39E-5 503 31.47 31.77 30.07 KM Plot
THCA rs10484436 chr6:26237155 C/T 4.05E-9 498 31.3 32.17 27.1 KM Plot
THCA rs10484629 chr6:133117870 A/C 4.36E-12 498 31.47 32.67 30.53 KM Plot
THCA rs10489522 chr1:41504442 T/A 1.22E-7 502 27.33 30.48 31.92 KM Plot
THCA rs10509758 chr10:104681710 T/C 3.04E-9 502 31.03 34.18 29.58 KM Plot
THCA rs10509760 chr10:104634107 A/G 6.84E-14 503 31.27 36.17 32.1 KM Plot
THCA rs10509763 chr10:104776391 G/A 6.98E-14 503 31.15 36.02 32.1 KM Plot
THCA rs10520827 chr5:15876687 C/T 2.47E-8 503 23.27 28.63 31.7 KM Plot
THCA rs10535426 chr19:49573362 TGGA/T 1.3E-5 498 31.47 32.37 25.65 KM Plot
THCA rs10555228 chr3:97283059 CATT/C 8.03E-5 499 31.47 31.37 34.07 KM Plot
THCA rs10575592 chr3:69169384 TTAAAA/T 6.42E-6 480 32.35 30.27 14.8 KM Plot
THCA rs10579045 chr7:43941926 ATCAC/A 1.56E-9 502 31.15 33.5 31.03 KM Plot
THCA rs10583 chr14:24662177 C/T 3.32E-11 503 31.7 31.77 14.98 KM Plot
THCA rs10651701 chr6:88309072 A/ATTAT 0.000151 480 32.45 30.53 31.7 KM Plot
THCA rs10673776 chr2:87019622 A/ATT 3.05E-7 502 32.35 28.83 32.1 KM Plot